Dataset
Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies
Ruđer Bošković Institute, 2025. urn:nbn:hr:241:846524
Volarić, Marin; Meštrović Radan, Nevenka; Despot-Slade, Evelin

 Dataset
Dataset: satxplor_code_and_data.zip, 21.16 MB
Access Condition: Open access
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Cite this document

Volarić, M., Meštrović Radan, N. & Despot Slade, E. (2025). Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies [Data set]. https://urn.nsk.hr/urn:nbn:hr:241:846524.

Volarić, Marin, et al. Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies. Institut Ruđer Bošković, 2025. 20 Feb 2025. https://urn.nsk.hr/urn:nbn:hr:241:846524.

Volarić, Marin, Nevenka Meštrović Radan, and Evelin Despot Slade. 2025. Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies. Institut Ruđer Bošković. https://urn.nsk.hr/urn:nbn:hr:241:846524.

Volarić, M., Meštrović Radan, N. and Despot Slade, E. 2025. Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies. Institut Ruđer Bošković. [Online]. [Accessed 20 February 2025]. Available from: https://urn.nsk.hr/urn:nbn:hr:241:846524.

Volarić M, Meštrović Radan N, Despot Slade E. Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies. [Internet]. Institut Ruđer Bošković; 2025, [cited 2025 February 20] Available from: https://urn.nsk.hr/urn:nbn:hr:241:846524.

M. Volarić, N. Meštrović Radan and E. Despot Slade, Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies, Institut Ruđer Bošković, 2025. Accessed on: Feb 20, 2025. Available: https://urn.nsk.hr/urn:nbn:hr:241:846524.

Title (english)Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies
AuthorMarin Volarić
Ruđer Bošković Institute
AuthorNevenka Meštrović Radan
Ruđer Bošković Institute
AuthorEvelin Despot-Slade
Ruđer Bošković Institute
Scientific / art field,
discipline and subdiscipline		NATURAL SCIENCES
Biology
Biochemistry and Molecular Biology
Abstract (english)
This is the code and the test dataset for the SatXplor satellite DNA analysis pipeline presented in the paper: Marin Volarić, Nevenka Meštrović, Evelin Despot-Slade, SatXplor—a comprehensive pipeline for satellite DNA analyses in complex genome assemblies, Briefings in Bioinformatics, 26(1), published 2024 https://doi.org/10.1093/bib/bbae660. Contains python and R scripts necessary for running the pipeline with included documentation in the README.md markdown document with detailed instructions. Both precompiled-binaries and source code for kmer-edge-detection are also included in the repository. It is also open-source and freely accessible at https://github.com/mvolar/SatXplor.
Methods (english)R and python scripts, Rust source code.
Keywords (english)
Languageenglish
URN:NBNurn:nbn:hr:241:846524
Publication2025-01-20
Version1.0
ProjectNumber: IP-2019-04-4910
Title (croatian): (Epi)genomika i transkriptomika eukromatinskih satelitnih DNA u embriogenezi i razvoju
Title (english): (Epi)genomics and transcriptomics of euchromatic satellite DNAs in embryogenesis and development
Acronym: EpiTranSat
Leader: Nevenka Meštrović Radan
Jurisdiction: Croatia
Funding stream: Research Projects
External related objectIs cited by: DOI 10.1093/bib/bbae660
External related objectIs identical to: URL https://github.com/mvolar/SatXplor
PublisherInstitut Ruđer Bošković
Ruđer Bošković Institute
Access conditionsOpen access
Terms of useLicence Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) icon
Created on2025-01-20 14:50:56