Skup podataka
Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies
Institut Ruđer Bošković, 2025. urn:nbn:hr:241:846524
Volarić, Marin; Meštrović Radan, Nevenka; Despot-Slade, Evelin

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Skup podataka: satxplor_code_and_data.zip, 21.16 MB
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Volarić, M., Meštrović Radan, N. i Despot Slade, E. (2025). Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies [Skup podataka]. https://urn.nsk.hr/urn:nbn:hr:241:846524.

Volarić, Marin, et al. Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies. Institut Ruđer Bošković, 2025. 14.02.2025. https://urn.nsk.hr/urn:nbn:hr:241:846524.

Volarić, Marin, Nevenka Meštrović Radan, i Evelin Despot Slade. 2025. Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies. Institut Ruđer Bošković. https://urn.nsk.hr/urn:nbn:hr:241:846524.

Volarić, M., Meštrović Radan, N. i Despot Slade, E. 2025. Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies. Institut Ruđer Bošković. [Online]. [Citirano 14.02.2025.]. Preuzeto s: https://urn.nsk.hr/urn:nbn:hr:241:846524.

Volarić M, Meštrović Radan N, Despot Slade E. Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies. [Internet]. Institut Ruđer Bošković; 2025, [pristupljeno 14.02.2025.] Dostupno na: https://urn.nsk.hr/urn:nbn:hr:241:846524.

M. Volarić, N. Meštrović Radan i E. Despot Slade, Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies, Institut Ruđer Bošković, 2025. Citirano: 14.02.2025. Dostupno na: https://urn.nsk.hr/urn:nbn:hr:241:846524.

Za citiranje koristite ovu mrežnu adresu: https://urn.nsk.hr/urn:nbn:hr:241:846524
Naslov (engleski)Code and data for SatXplor - a comprehensive pipeline for satellite DNA analyses in complex genome assemblies
AutorMarin Volarić
Ruđer Bošković Institute
AutorNevenka Meštrović Radan
Ruđer Bošković Institute
AutorEvelin Despot-Slade
Ruđer Bošković Institute
Znanstveno / umjetničko
područje, polje i grana		PRIRODNE ZNANOSTI
Biologija
Biokemija i molekularna biologija
Sažetak (engleski)
This is the code and the test dataset for the SatXplor satellite DNA analysis pipeline presented in the paper: Marin Volarić, Nevenka Meštrović, Evelin Despot-Slade, SatXplor—a comprehensive pipeline for satellite DNA analyses in complex genome assemblies, Briefings in Bioinformatics, 26(1), published 2024 https://doi.org/10.1093/bib/bbae660. Contains python and R scripts necessary for running the pipeline with included documentation in the README.md markdown document with detailed instructions. Both precompiled-binaries and source code for kmer-edge-detection are also included in the repository. It is also open-source and freely accessible at https://github.com/mvolar/SatXplor.
Metodologija (engleski)R and python scripts, Rust source code.
Ključne riječi (engleski)
Jezikengleski
URN:NBNurn:nbn:hr:241:846524
Datum objave2025-01-20
Verzija1.0
ProjektŠifra: IP-2019-04-4910
Naziv (hrvatski): (Epi)genomika i transkriptomika eukromatinskih satelitnih DNA u embriogenezi i razvoju
Naziv (engleski): (Epi)genomics and transcriptomics of euchromatic satellite DNAs in embryogenesis and development
Kratica: EpiTranSat
Voditelj: Nevenka Meštrović Radan
Pravna nadležnost: Hrvatska
Financijer: Hrvatska zaklada za znanost
Linija financiranja: Research Projects
Vanjski povezani objektCitiran od: DOI 10.1093/bib/bbae660
Vanjski povezani objektIdentičan kao: URL https://github.com/mvolar/SatXplor
IzdavačInstitut Ruđer Bošković
Ruđer Bošković Institute
Prava pristupaOtvoreni pristup
Uvjeti korištenjaIkona licence Imenovanje-Nekomercijalno 4.0 međunarodna (CC BY-NC 4.0)
Datum i vrijeme pohrane2025-01-20 14:50:56