Code and data for "Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events"
Dataset: tcasont_assembly.zip, 7.98 MB Access Condition: Open access Description: Code and data (English)
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Volarić, M., Despot Slade, E., Veseljak, D., Mravinac, B. & Meštrović Radan, N. (2025). Code and data for "Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events" [Data set]. https://urn.nsk.hr/urn:nbn:hr:241:062420.
Volarić, Marin, et al. Code and data for "Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events". Institut Ruđer Bošković, 2025. 13 Feb 2025. https://urn.nsk.hr/urn:nbn:hr:241:062420.
Volarić, Marin, Evelin Despot Slade, Damira Veseljak, Brankica Mravinac, and Nevenka Meštrović Radan. 2025. Code and data for "Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events". Institut Ruđer Bošković. https://urn.nsk.hr/urn:nbn:hr:241:062420.
Volarić, M., et al. 2025. Code and data for "Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events". Institut Ruđer Bošković. [Online]. [Accessed 13 February 2025]. Available from: https://urn.nsk.hr/urn:nbn:hr:241:062420.
Volarić M, Despot Slade E, Veseljak D, Mravinac B, Meštrović Radan N. Code and data for "Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events". [Internet]. Institut Ruđer Bošković; 2025, [cited 2025 February 13] Available from: https://urn.nsk.hr/urn:nbn:hr:241:062420.
M. Volarić, E. Despot Slade, D. Veseljak, B. Mravinac and N. Meštrović Radan, Code and data for "Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events", Institut Ruđer Bošković, 2025. Accessed on: Feb 13, 2025. Available: https://urn.nsk.hr/urn:nbn:hr:241:062420.
Code and data for "Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events"
Scientific / art field, discipline and subdiscipline
NATURAL SCIENCES Biology Biochemistry and Molecular Biology
Abstract (english)
This repository contains the code and data necessary for recreating the results from the study: "Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events". Data are the supplementary material and annotation files, while code are the necessary R notebooks.
Number: IP-2019-04-4910 Title (croatian): (Epi)genomika i transkriptomika eukromatinskih satelitnih DNA u embriogenezi i razvoju Title (english): (Epi)genomics and transcriptomics of euchromatic satellite DNAs in embryogenesis and development Acronym: EpiTranSat Leader: Nevenka Meštrović Radan Jurisdiction: Croatia Funding stream: Research Projects